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Colorectal Cancer Biomarkers

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Table 1. Outcomes of RAS Mutations and Anti-EGFR Therapy Overall Survival Progression-Free Survival Characteristic HR (95% CI) p Value HR (95% CI) p Value RAS nm v RAS mutation, RAS nm superior 0.72 (0.56 to 0.92) <.01 0.6 (0.48 to 0.76) <0.001 KRAS exon 2 mutant v new RAS mutant ns ns KRAS nm exon 2, anti- EGFR v no anti-EGFR 0.9 (0.83 to 0.98) ns 0.68 (0.58 to 0.80) <0.001 KRAS exon 2 mutant, anti-EGFR v no anti- EGFR 1.05 (0.95 to 1.17) ns 1.14 (0.95 to 1.36) ns RAS nm, anti-EGFR v no anti-EGFR 0.87 (0.77 to 0.99) <0.04 0.62 (0.5 to 0.76) <0.001 Any RAS mutant, anti- EGFR v no anti-EGFR 1.08 (0.97 to 1.21) ns 1.12 (0.94 to 1.34) ns Table 2. Concordance Rates Between Primary and Metastatic Lesions a Genes Tested (n) Concordance Rate (%) KRAS (117) 91 KRAS, NRAS, BRAF (84) 98.8 PIK3CA (117) 94 PIK3CA (84) 92.8 PTEN immunohistochemistry 66 a Summary of two randomized clinical trials where comparison of mutation in KRAS, NRAS, BRAF, and PIK3CA was performed for paired primary tumor and metastatic lesions. Immunohistochemistry for PTEN was done in Cejas et al. (Curr Cancer Drug Targets 12:124-131, 2012). In the study by Cejas et al. metastases were synchronous or metachronous. DNA was extracted from formalin-fixed, paraffin-embedded tissue, and mutational analysis was performed with a polymerase chain reaction– direct sequencing assay. KRAS mutations were detected in 42% of metastatic lesions and 39% of primary tumors. In the study by Vakiani et al. (J Clin Oncol. 30:2956-2962, 2012) DNA was extracted from frozen tissue, and the iPLEX assay (Agena Bioscience, San Diego, CA) was used to examine the following mutations: KRAS 12, 13, 22, 61, 117, and 146; NRAS 12, 13, and 61; BRAF 600; and PIK3CA 345, 420, 542, 545, 546, 1043, and 1047.

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